Pathway Reconstruction Methods

Note

While every algorithm here is broadly labelled as a pathway reconstruction method, there are other sub-types of algorithms that have more specialized capabilities than the rest. Currently, SPRAS also supports edge orientation algorithms (e.g. MEO) and active module identifiers/disease module mining methods (e.g. DOMINO).

All Pairs

• All Pairs

BowTieBuilder

• BowTieBuilder

DOMINO

• DOMINO

MEO

• MEO

MinCostFlow

• MinCostFlow

Omics Integrator I

• Omics Integrator 1

Omics Integrator II

• Omics Integrator 2

PathLinker

• PathLinker

ResponseNet

• ResponseNet

RWR

• RWR

STRWR

• ST_RWR